Sobia’s first Shiny App is now up and running for final pre-publication testing on our new EdwardsLab RShiny server. Please feel free to try it out. Any comments and suggestions can be posted here, by email, or via the GitHub issues page.
The SLiMEnrich App allows users to predict Domain-Motif Interactions (DMIs) from Protein-Protein Interaction data (PPI) and to estimate the background distribution of expected DMI by chance through a randomisation approach. The walkthrough has more details.
SLiMEnrich can be used to:
With a bit of imagination, SLiMEnrich can be adapted to generate and assess predictions for other kinds of interactions. See docs for details.